Research Projects Directory
Search the directory to explore what research is underway in the Researcher Workbench
Search the directory to explore what research is underway in the Researcher Workbench
Demo for Hypertension Prevalence
Scientific Questions Being Studied
This workspace is meant to create a tutorial on the Dataset Builder Tool based on selecting cohorts and concept sets to study hypertension prevalence.
Project Purpose(s)
Scientific Approaches
We will be creating a dataset for a cohort for hypertension and for concept sets for demographics, education, income, and state.
Anticipated Findings
The findings from this workspace will be a demonstration for others on how you create a dataset using the dataset builder tool by creating an example dataset for hypertension prevalence.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierResearch Team
Owner:
Collaborators:
Webinars_and_Teaching
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierCT Stable
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled Tiertesting
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierMar 13 demo - running
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierDELETEME RStudio broken
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierMar 13 RT
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered Tier<h1>test</h1>
Scientific Questions Being Studied
test
Project Purpose(s)
Scientific Approaches
test
Anticipated Findings
test
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered Tier<h1>test</h1>
Scientific Questions Being Studied
test
Project Purpose(s)
Scientific Approaches
test
Anticipated Findings
test
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered Tier<h1>test</h1>
Scientific Questions Being Studied
test
Project Purpose(s)
Scientific Approaches
test
Anticipated Findings
test
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered Tiertestname
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierORAU Researcher Workbench Workshop/Demo
Scientific Questions Being Studied
The purpose of this workspace is to provide an overview of the Researcher Workbench functionality (Cohort Builder and Dataset Builder) for education and training purposes.
Project Purpose(s)
Scientific Approaches
The Research Support team will demonstrate how to find concepts on the Researcher Workbench using a use case of sickle cell trait to create a case and control cohort. The goal of this project is to highlight the capabilities of the Cohort Builder, Cohort Review, and Dataset Builder, as well as explore All of Us data structure.
Anticipated Findings
There are no anticipated findings from this study; this project is used for education and training purposes only. After the workshop, we hope the attendees will have a basic understanding of how to create a cohort and dataset within the Researcher Workbench. Dissemination of this workspace and related cohorts, datasets, and notebooks will be for DRC operational use only.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierResearch Team
Owner:
Researcher Workbench Demo
Scientific Questions Being Studied
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.
Project Purpose(s)
Scientific Approaches
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied. This workspace will demonstration the use of the the Cohort Builder, Concept Set Selector, Dataset Builder, and notebooks.
Anticipated Findings
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied, and there are no anticipated findings.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierResearch Team
Owner:
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Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
Data Set Used
Registered TierIntro to the Researcher Workbench Demo
Scientific Questions Being Studied
There are no major scientific questions being addressed in this workspace. This workspace will be used as a demonstration workspace for outreach presentations and demonstrations.
Project Purpose(s)
Scientific Approaches
This workspace will be used to demonstrate how to pull data into a notebook and how to use the Researcher Workbench.
Anticipated Findings
This workspace will be used for demonstration purposes only. No research findings will be published.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierDemo_Projects
Scientific Questions Being Studied
This is a test workspace which is used for for Outreach presentations, to demonstrate how to create a cohort and dataset. Different cohorts and datasets will be created as examples of how to (1) perform analysis of phenotype data (disease state, lab measurements etc) and (2) perform GWAS analysis to identify genetic variants which are associated with specific disease states.
Project Purpose(s)
Scientific Approaches
To demonstrate how to perform analysis of phenotype data, I will use the cohort builder and dataset builder to build case and control cohorts with the concept sets of interest (disease state, lab measurements, basic demographics) To demonstrate how to perform a GWAS analysis, I will build cohorts of participants with srWGS data available with concept sets of interest (disease state, basic demographic data) using the cohort and dataset builders. These datasets will be exported to Jupyter Notebook to perform GWAS analysis and display the results as a Manhattan plot.
Anticipated Findings
Not applicable, as this is a test workspace to familiarize myself with performing different types of analysis on the workbench.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierResearcher Workbench Demo
Scientific Questions Being Studied
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.
Project Purpose(s)
Scientific Approaches
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied. This workspace will demonstration the use of the the Cohort Builder, Concept Set Selector, Dataset Builder, and notebooks.
Anticipated Findings
This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied, and there are no anticipated findings.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierResearch Team
Owner:
temporal_feature
Scientific Questions Being Studied
present the temporal feature in cohort builder during office hours to reasearchers
Project Purpose(s)
Scientific Approaches
present the temporal feature in cohort builder during office hours to reasearchers. We are using mostly cohort builder.
Anticipated Findings
not applicable
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierResearch Team
Owner:
Collaborators:
Office Hour - Intro to Fitbit Data
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
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Anticipated Findings
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Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierResearch Team
Owner:
Collaborators:
Research Scholars Program
Scientific Questions Being Studied
Demonstration
Project Purpose(s)
Scientific Approaches
Demonstration
Anticipated Findings
Demonstration
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierMeasurement Invariance
Scientific Questions Being Studied
The proposed analyses aim to describe the correlation and covariance of available measures across different subgroups to gain a better understanding of how these measures are related.
Project Purpose(s)
Scientific Approaches
Survey data and aggregated results from exploratory and confirmatory factor analyses will be used to assess psychometric characteristics of measures across different socio-demographic variables.
Anticipated Findings
Findings of proposed analyses can help advancing our understanding of measurement invariance across different subgroups and inform testing assumptions of
synthetic datasets.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierNIDA Demo (Stable)
Scientific Questions Being Studied
This will be used to demonstrate how to use the Workbench, and thus, won't be testing any hypotheses.
Project Purpose(s)
Scientific Approaches
I'll be using the Controlled Tier dataset to demonstrate how to use the Cohort and Dataset Builders as well as the Genomic Extraction Tool.
Anticipated Findings
I have no anticipated findings for this project as it is for demonstration purposes.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled TierResearch Team
Owner:
NP Test 925
Scientific Questions Being Studied
none
Project Purpose(s)
Scientific Approaches
none
Anticipated Findings
none
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierExample of Hypertension Study
Scientific Questions Being Studied
This is an educational workspace for a training section to teach All of Us community about how to build a All of Us dataset. This workspace will study education, state and income of a hypertension cohort.
Project Purpose(s)
Scientific Approaches
A cohort of individuals with hypertension will be first built. Concept sets include education, income, and geographic state will be selected. Then a dataset will be built based on these concept sets for this cohort.
Anticipated Findings
The dataset of hypertension individuals will be built. The distribution of educations, incomes and geographic states of the individuals in this cohort can be analyzed later.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierNIDA Conference: Data Collection and Wrangling
Scientific Questions Being Studied
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Project Purpose(s)
Scientific Approaches
dsdsdsd
Anticipated Findings
dsdfsdsdsds
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Registered TierResearch Team
Owner:
Collaborators:
You can request that the All of Us Resource Access Board (RAB) review a research purpose description if you have concerns that this research project may stigmatize All of Us participants or violate the Data User Code of Conduct in some other way. To request a review, you must fill in a form, which you can access by selecting ‘request a review’ below.
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