Megan He
Project Personnel, All of Us Program Operational Use
1 active project
Demo_Projects
Scientific Questions Being Studied
This is a test workspace which is used for for Outreach presentations, to demonstrate how to create a cohort and dataset. Different cohorts and datasets will be created as examples of how to (1) perform analysis of phenotype data (disease state, lab measurements etc) and (2) perform GWAS analysis to identify genetic variants which are associated with specific disease states.
Project Purpose(s)
- Educational
Scientific Approaches
To demonstrate how to perform analysis of phenotype data, I will use the cohort builder and dataset builder to build case and control cohorts with the concept sets of interest (disease state, lab measurements, basic demographics) To demonstrate how to perform a GWAS analysis, I will build cohorts of participants with srWGS data available with concept sets of interest (disease state, basic demographic data) using the cohort and dataset builders. These datasets will be exported to Jupyter Notebook to perform GWAS analysis and display the results as a Manhattan plot.
Anticipated Findings
Not applicable, as this is a test workspace to familiarize myself with performing different types of analysis on the workbench.
Demographic Categories of Interest
This study will not center on underrepresented populations.
Data Set Used
Controlled Tier
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